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Research Article Open access CC BY 4.0

Advances in Understanding Soil Microbial Diversity and Its Role in Ecosystem Functioning: A Comprehensive Review

Lalita Kumar Mohanty, Mohd Ashaq, Pampangouda, Ashoka, P, Meenakshi Sahu, Narinder Panotra, Shabnam Kundal, Sumit Rai, Sanjeevani Choudhary, Lalit Upadhyay

Journal of Scientific Research and Reports · pp. 1139–1155 · Published 24 Nov 2025

10.9734/jsrr/2025/v31i113743

Abstract

Soil microbial diversity represents one of the most complex and essential components of terrestrial ecosystems, playing crucial roles in nutrient cycling, organic matter decomposition, and ecosystem stability. This comprehensive review examines recent advances in understanding soil microbial communities and their functional significance in ecosystem processes. Through analysis of contemporary molecular techniques including high-throughput sequencing, metagenomics, and metabolomics, we explore how technological innovations have revolutionized our understanding of microbial diversity patterns across various soil types and environmental gradients. The review synthesizes findings on key microbial groups including bacteria, archaea, fungi, and protists, examining their interactions and contributions to critical ecosystem services such as carbon sequestration, nitrogen fixation, and phosphorus mobilization. We discuss the impacts of anthropogenic activities, climate change, and land-use practices on soil microbial communities and their functional resilience. Special attention is given to the Indian subcontinent's diverse soil ecosystems, from the Indo-Gangetic plains to the Western Ghats, highlighting region-specific microbial adaptations and their agricultural implications. The review identifies current knowledge gaps and proposes future research directions, emphasizing the need for integrated approaches combining traditional and cutting-edge methodologies. Understanding soil microbial diversity is paramount for developing sustainable land management strategies, enhancing agricultural productivity, and mitigating climate change impacts through improved soil health management.

Soil microbiome ecosystem functioning microbial diversity nutrient cycling metagenomics sustainable agriculture

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